The history of fusion research resembles the way in which one builds skyscrapers: laying the first foundation stone, one thinks about the top of the skyscraper. At the early stages of fusion, when it became clear that the thermonuclear reactor would operate with DT plasma confined by the magnetic field, the study of the `top item'—the physics of 3.5 MeV alpha particles produced by the DT fusion reaction—was initiated. The first publications on this topic appeared as long ago as the 1960s. At that time, because the physics of alpha particles was far from the experimental demand, investigations were carried out by small groups of theoreticians who hoped to discover important and interesting phenomena in this new research area.Soon after the beginning of the work, theoreticians discovered that alpha particles could excite various instabilities in fusion plasmas. In particular, at the end of the 1960s an Alfvén instability driven by alpha particles was predicted. Later it turned out that a variety of Alfvén instabilities with very different features does exist. Instabilities with perturbations of the Alfvénic type play an important role in current experiments; it is likely that they will affect plasma performance in ITER and future reactors.The first experimental manifestation of instabilities excited by superthermal particles in fusion devices was observed in the PDX tokamak in 1983. In this device a large-scale instability—the so called `fishbone instability'—associated with ions produced by the neutral beam injection resulted in a loss of a large fraction of the injected energy. Since then, the study of energetic-ion-driven instabilities and the effects produced by energetic ions in fusion plasmas has attracted the growing attention of both experimentalists and theorists.Recognizing the importance of this topic, the first conference on fusion alpha particles was held in 1989 in Kyiv under the auspices of the IAEA. The meeting in Kyiv and several subsequent meetings (Aspenäs (1991), Trieste (1993), Princeton (1995), and JET/Abingdon (1997)) were entitled `Alpha Particles in Fusion Research'. During the JET/Abingdon meeting in 1997 it was decided to extend the topic by including other suprathermal particles, in particular accelerated electrons, and rename the meetings accordingly. The subsequent meetings with the current name `Energetic Particles in Magnetic Confinement Systems' were held in Naka (1999), Gothenburg (2001), San Diego (2003), Takayama (2005) and Kloster Seeon (2007).The most recent meeting in this series was held in Kyiv, Ukraine, in September 2009. This was an anniversary meeting, 20 years after the first meeting. Like the first meeting, it was hosted by the Institute for Nuclear Research, National Academy of Sciences of Ukraine. It was attended by about 80 researchers from 18 countries, ITER, and EC. The program of the meeting consisted of 78 presentations, including 12 invited talks, 16 oral contributed talks, and 50 posters, which were selected by the International Advisory Committee (IAC). The IAC consisted of 11 people representing EC (L.-G. Eriksson), Germany (S. Günter), Italy (F. Zonca), Japan (K. Shinohara and K. Toi), Switzerland (A. Fasoli), UK (S. Sharapov), Ukraine (Ya. Kolesnichenko—IAC Chair), USA (H. Berk, W. Heidbrink, and R. Nazikian).The meeting program covered a wide range of physics issues concerning energetic ions in toroidal fusion facilities—tokamaks, stellarators, and spherical tori. Many new interesting and practically important results of both experimental and theoretical studies were reported. The research presented covered topics such as instabilities driven by energetic ions, transport of energetic ions caused by plasma microturbulence and destabilized eigenmodes, non-linear phenomena induced by the instabilities, classical transport processes, effects of runaway electrons, diagnostics of energetic ions and plasmas, and aspects of ITER physics. In addition to these topics, which were also covered at previous conferences in this series and have become conventional, experimental and theoretical results on the influence of energetic ions on bulk plasma transport properties were also reported.Some materials from the meeting are available on the web page http://www.kinr.kiev.ua/TCM/index.html. 24 of the works presented at the meeting are published in this special issue. These works were reviewed to the usual high standard of Nuclear Fusion. The guest editor of this special issue is grateful to the publishers for their cooperation.