The 500 keV negative-ion based neutral beam injector for JT-60U started operations in 1996. The availability of the negative ion based neutral beam injection system has been improved gradually by modifying the ion source and optimizing its operation parameters. Recently, the extension of the pulse duration up to 30 s has been intended to study quasi-steady state plasma on JT-60U. The most serious issue is to reduce the heat load on the grids for long pulse operation. Two modifications have been proposed to reduce the heat load. One is to suppress the spread of beamlet-bundle which may be caused by beamlet–beamlet interaction in the multi-aperture grid due to the space charge force. Indeed, the investigation of the beam deflection, which was measured by the infrared camera on the target plate set 3.5 m away from the grid, indicates that the spread of beamlet-bundle is in proportion to the current density. Field-shaping plates were attached on the extraction grid to modify the local electric field. The plate thickness was optimized to steer the beamlet deflection. The other is to reduce the stripping loss, where the electron of the negative ion beam is stripped and accelerated in the accelerator and then collides with the grids. The ion source was modified to reduce the pressure in the accelerator column to suppress the beam-ion stripping loss. To date, long pulse injection of 19 s of 1.5–1.6 MW at a high energy beam of 360 keV, 9–10 A for D− has been obtained by one ion source with these modifications.